rs229974004 SNP Detail

Summary

• ID
  rs229974004
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:149224342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA TCCTTTGGGG CTTTCCCCAC
  M
  CGCGGTCACA CCTGAGCAGC AGGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325984963	CHEV_X_146875889	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229974004					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:149224342 () rs orientation: forward

Symbol	Name	Function Class
Rr8351	regulatory region 8351	within coordinates
Tssr164356	transcription start site region 164356	500 bp upstream
Tssr164357	transcription start site region 164357	409 bp upstream
Tssr164358	transcription start site region 164358	277 bp upstream
Vcf2	VCP nuclear cofactor family member 2	within coordinates