rs229983810 SNP Detail

Summary

• ID
  rs229983810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24658954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCTGTTT TCTTCTCTTT CCTTTCAAGG CAGAGTTCAC
  TGTGAACTAA TTAGGTGACA GAAAAAACTC ATTAACATGG ATTTGAGTAA ATGACTTGGC
  R
  TCACTGCTAT GCTGGGGATT GGGAGGTAGC ATTAGTGTGA GCCCAGGGTC TTCAGGAGAG
  ATGAGGTGGG GTTTTTTCCC TTAGATTCAG AGGGTGAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495785	CHEV_5_23959774	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229983810					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24658954 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3			Intron
				Noncoding-Transcript-Variant
Cpgi15603	CpG island 15603			638 bp distal
Rr608324	regulatory region 608324			1739 bp distal
Rr608325	regulatory region 608325			842 bp distal
Rr608326	regulatory region 608326			371 bp distal
Tssr45426	transcription start site region 45426			1987 bp downstream
Tssr45427	transcription start site region 45427			1966 bp downstream