rs229983906 SNP Detail

Summary

• ID
  rs229983906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTCAAT AAACGTTGAG
  CCCTTGATGG ATCACCTTCT CCAGCATATT TGCATTTTCC CTTTATCAGT AATTGGCAGA
  TGAAAGCCTT TGTCCTCAGT TGAAAGAATT CCAAGCATTC CCTCTGAGTG GGGGAGGAGG
  TTATTTTGGG CCACAGGGGG AAGGGCCAGA CCCTTGAGCT CTAACTTCAG GCTGATTGTC
  Y
  CCCAGGAGCT GAGAATAGGT GAGAAATAGG AAAGGGGGCT TCTTTTGAGA AAGATGAGCT
  TTTAACACAA GCCAGCCTCA TTGGAAATGA AATAATGTCT TCCTGTACCG CCCTTGTAAA
  AGGCTCAGTC AGATCCTACC TGTGTTAGTC TGTTGTATCA TCTCAGGCCA ATTGAGCAAC
  TCTGTGTCCA AAGACAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530200	MGP_WTSI_5_123441672	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229983906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530200	MGP_WTSI_5_123441672	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129726 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	188 bp downstream
Rr620034	regulatory region 620034	1867 bp distal
Rr620035	regulatory region 620035	1722 bp distal
Rr620036	regulatory region 620036	847 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48735	transcription start site region 48735	1924 bp downstream
Tssr48736	transcription start site region 48736	1901 bp downstream
Tssr48737	transcription start site region 48737	1720 bp downstream
Tssr48738	transcription start site region 48738	894 bp downstream
Tssr48739	transcription start site region 48739	883 bp downstream
Tssr48740	transcription start site region 48740	838 bp downstream
Tssr48741	transcription start site region 48741	799 bp downstream
Tssr53175	transcription start site region 53175	1373 bp upstream
Tssr53176	transcription start site region 53176	1256 bp upstream
Tssr53177	transcription start site region 53177	1200 bp upstream
Tssr53178	transcription start site region 53178	1168 bp upstream
Tssr53179	transcription start site region 53179	1134 bp upstream
Tssr53180	transcription start site region 53180	1090 bp upstream