rs229987883 SNP Detail

Summary

• ID
  rs229987883
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:118531261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA ATTGAAAACA TTAGGGTACC
  S
  CAGTGGTGTG CTCCCCCTGA CACCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323216694	CHEV_9_118611311	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229987883					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118531261 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga9	integrin alpha 9			Intron
				Noncoding-Transcript-Variant
Rr688308	regulatory region 688308			1833 bp distal
Rr688309	regulatory region 688309			716 bp distal
Tssr87646	transcription start site region 87646			1155 bp upstream
Tssr87647	transcription start site region 87647			1182 bp upstream
Tssr87648	transcription start site region 87648			1198 bp upstream
Tssr87649	transcription start site region 87649			1242 bp upstream
Tssr87650	transcription start site region 87650			1284 bp upstream
Tssr87651	transcription start site region 87651			1302 bp upstream
Tssr87652	transcription start site region 87652			1579 bp upstream
Tssr91958	transcription start site region 91958			324 bp upstream