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rs229989128 SNP Detail
Summary
  • ID
    rs229989128
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127577 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CATCT CCATCTTCTA TGTCTGTCTC
Y
CTCCCCTTCT GGCTCCTTTT CTCAT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198926 CHEV_7_51733523 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs229989128 SNP T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127577 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1799 bp downstream
Tssr2223 transcription start site region 2223 1620 bp downstream
Tssr2224 transcription start site region 2224 774 bp downstream
Tssr2225 transcription start site region 2225 734 bp downstream
Tssr2226 transcription start site region 2226 208 bp downstream
Tssr2227 transcription start site region 2227 858 bp upstream
Tssr2228 transcription start site region 2228 1925 bp upstream
Tssr66207 transcription start site region 66207 1989 bp downstream
Tssr66208 transcription start site region 66208 1975 bp downstream
Tssr66209 transcription start site region 66209 1944 bp downstream
Tssr66210 transcription start site region 66210 1911 bp downstream
Tssr66211 transcription start site region 66211 1871 bp downstream
Tssr66212 transcription start site region 66212 1828 bp downstream
Tssr66213 transcription start site region 66213 1813 bp downstream
Tssr66214 transcription start site region 66214 1781 bp downstream
Tssr66215 transcription start site region 66215 1751 bp downstream
Tssr66216 transcription start site region 66216 1704 bp downstream
Tssr66217 transcription start site region 66217 1632 bp downstream
Tssr66218 transcription start site region 66218 1578 bp downstream
Tssr66219 transcription start site region 66219 1536 bp downstream
Tssr66220 transcription start site region 66220 1502 bp downstream
Tssr66221 transcription start site region 66221 1483 bp downstream
Tssr66222 transcription start site region 66222 1430 bp downstream
Tssr66223 transcription start site region 66223 1363 bp downstream
Tssr66224 transcription start site region 66224 1340 bp downstream
Tssr66225 transcription start site region 66225 1320 bp downstream
Tssr66226 transcription start site region 66226 1307 bp downstream
Tssr66227 transcription start site region 66227 1266 bp downstream
Tssr66228 transcription start site region 66228 1263 bp downstream
Tssr66229 transcription start site region 66229 1250 bp downstream
Tssr66230 transcription start site region 66230 1230 bp downstream
Tssr66231 transcription start site region 66231 1195 bp downstream
Tssr66232 transcription start site region 66232 1183 bp downstream
Tssr66233 transcription start site region 66233 1161 bp downstream
Tssr66234 transcription start site region 66234 1131 bp downstream
Tssr66235 transcription start site region 66235 1111 bp downstream
Tssr66236 transcription start site region 66236 1084 bp downstream
Tssr66237 transcription start site region 66237 1063 bp downstream
Tssr66238 transcription start site region 66238 1044 bp downstream
Tssr66239 transcription start site region 66239 993 bp downstream
Tssr66240 transcription start site region 66240 912 bp downstream
Tssr66241 transcription start site region 66241 900 bp downstream
Tssr66242 transcription start site region 66242 820 bp downstream
Tssr66243 transcription start site region 66243 806 bp downstream
Tssr66244 transcription start site region 66244 755 bp downstream
Tssr66245 transcription start site region 66245 693 bp downstream
Tssr66246 transcription start site region 66246 665 bp downstream
Tssr66247 transcription start site region 66247 618 bp downstream
Tssr66248 transcription start site region 66248 577 bp downstream
Tssr66249 transcription start site region 66249 554 bp downstream
Tssr66250 transcription start site region 66250 535 bp downstream
Tssr66251 transcription start site region 66251 510 bp downstream
Tssr66252 transcription start site region 66252 479 bp downstream
Tssr66253 transcription start site region 66253 451 bp downstream
Tssr66254 transcription start site region 66254 403 bp downstream
Tssr66255 transcription start site region 66255 376 bp downstream
Tssr66256 transcription start site region 66256 327 bp downstream
Tssr66257 transcription start site region 66257 316 bp downstream
Tssr66258 transcription start site region 66258 273 bp downstream
Tssr66259 transcription start site region 66259 237 bp downstream
Tssr66260 transcription start site region 66260 130 bp downstream
Tssr66261 transcription start site region 66261 109 bp downstream
Tssr66262 transcription start site region 66262 102 bp downstream
Tssr66263 transcription start site region 66263 90 bp downstream
Tssr66264 transcription start site region 66264 66 bp downstream
Tssr66265 transcription start site region 66265 23 bp downstream
Tssr66266 transcription start site region 66266 6 bp downstream
Tssr66267 transcription start site region 66267 11 bp upstream
Tssr66268 transcription start site region 66268 40 bp upstream
Tssr66269 transcription start site region 66269 60 bp upstream
Tssr66270 transcription start site region 66270 111 bp upstream
Tssr66271 transcription start site region 66271 129 bp upstream
Tssr66272 transcription start site region 66272 195 bp upstream
Tssr66273 transcription start site region 66273 207 bp upstream
Tssr66274 transcription start site region 66274 222 bp upstream
Tssr66275 transcription start site region 66275 230 bp upstream
Tssr66276 transcription start site region 66276 259 bp upstream
Tssr66277 transcription start site region 66277 267 bp upstream
Tssr66278 transcription start site region 66278 299 bp upstream
Tssr66279 transcription start site region 66279 346 bp upstream
Tssr66280 transcription start site region 66280 385 bp upstream
Tssr66281 transcription start site region 66281 416 bp upstream
Tssr66282 transcription start site region 66282 442 bp upstream
Tssr66283 transcription start site region 66283 456 bp upstream
Tssr66284 transcription start site region 66284 473 bp upstream
Tssr66285 transcription start site region 66285 488 bp upstream
Tssr66286 transcription start site region 66286 525 bp upstream
Tssr66287 transcription start site region 66287 543 bp upstream
Tssr66288 transcription start site region 66288 579 bp upstream
Tssr66289 transcription start site region 66289 627 bp upstream
Tssr66290 transcription start site region 66290 688 bp upstream
Tssr66291 transcription start site region 66291 717 bp upstream
Tssr66292 transcription start site region 66292 755 bp upstream
Tssr66293 transcription start site region 66293 773 bp upstream
Tssr66294 transcription start site region 66294 794 bp upstream
Tssr66295 transcription start site region 66295 1079 bp upstream
Tssr66296 transcription start site region 66296 1212 bp upstream
Tssr66297 transcription start site region 66297 1255 bp upstream
Tssr66298 transcription start site region 66298 1280 bp upstream
Tssr66299 transcription start site region 66299 1349 bp upstream
Tssr66300 transcription start site region 66300 1356 bp upstream
Tssr66301 transcription start site region 66301 1380 bp upstream
Tssr66302 transcription start site region 66302 1394 bp upstream
Tssr66303 transcription start site region 66303 1435 bp upstream
Tssr66304 transcription start site region 66304 1443 bp upstream
Tssr66305 transcription start site region 66305 1453 bp upstream
Tssr66306 transcription start site region 66306 1487 bp upstream
Tssr66307 transcription start site region 66307 1544 bp upstream
Tssr66308 transcription start site region 66308 1597 bp upstream
Tssr66309 transcription start site region 66309 1618 bp upstream
Tssr66310 transcription start site region 66310 1656 bp upstream
Tssr66311 transcription start site region 66311 1733 bp upstream
Tssr66312 transcription start site region 66312 1749 bp upstream
Tssr66313 transcription start site region 66313 1770 bp upstream
Tssr66314 transcription start site region 66314 1778 bp upstream
Tssr66315 transcription start site region 66315 1798 bp upstream
Tssr66316 transcription start site region 66316 1857 bp upstream
Tssr66317 transcription start site region 66317 1869 bp upstream
Tssr66318 transcription start site region 66318 1914 bp upstream
Tssr66319 transcription start site region 66319 1937 bp upstream
Tssr66320 transcription start site region 66320 1964 bp upstream
Tssr66321 transcription start site region 66321 1982 bp upstream
Tssr72199 transcription start site region 72199 670 bp upstream
Tssr72200 transcription start site region 72200 276 bp downstream
Tssr72201 transcription start site region 72201 777 bp downstream
Tssr72202 transcription start site region 72202 1640 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory