rs229992895 SNP Detail

Summary

• ID
  rs229992895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCCAAT CACGGCCCAC
  GCTTCCACGT GGCGAGCCGT AACCAATGAG AGGTAGCGGG GAAGGCAGCG GGGAAATTTC
  AAACGTGTTT CCGGAGAGGG GTTGGGGTGC TGCTGTTTGG GCTGCAGCTT GGCTTTCAGA
  GGTGGGTGCA TCAGAGCGGG CATGGCAGAG AGGCTGCGGC CGGCGGGAGG CTGCTGGGTG
  R
  CGAGGGTGGC GGCGAGCGAG CTGGCGCTTG AGCCCCCGGC CAGGCGGGCG GGTACGGCCT
  GTAGGTCCTG GGCTGCTGGT GGGGGAGCAG GGCCCAGAAG CGGGTGCGCC GTGCGGGTCA
  GGACTGATTG TGTAACTCTC AAGACCTGCC CCCGTGGGTG GCTGTGAGCT GGGAGGAGGT
  GGGGAACCCC TTGCTCCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378290256	MGP_WTSI_9_83728426	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229992895					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378290256	MGP_WTSI_9_83728426	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	within coordinates
Gm57060	predicted gene, 57060	221 bp upstream
Rr383689	regulatory region 383689	within coordinates
Rr683950	regulatory region 683950	232 bp distal
Rr683951	regulatory region 683951	91 bp distal
Rr683952	regulatory region 683952	within coordinates
Tssr86358	transcription start site region 86358	151 bp downstream
Tssr86359	transcription start site region 86359	83 bp downstream
Tssr90761	transcription start site region 90761	253 bp upstream
Ttk	Ttk protein kinase	within coordinates