rs229996505 SNP Detail

Summary

• ID
  rs229996505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11687284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCACCACC ACCTCCTGGC
  TATAAAATTT GAAAATCATA CTGAGCCATT AAGGAGTAGA CACTATTCAT GGAAGTTTTA
  CTTTTTTTTT TTTTTTTTTT TGGTTTTTTT CGAGACAGGG TTTCTCTGTA TAGCCCTGGC
  TGTCCTGGAA CTCACGTTGT AGACCAGGCT GGTCTCGAAC TCAGAAATCC GCCTGCCTCT
  R
  CCTCCCAAGT GCTGGGATTA AAGGCGTGAG CCGCCACCAC CGGCCAGCTT CTACTTTTTA
  CTTAATGAAG TTTTACTTTT TCCCTTTTGC TATATATTTG TTCCTTGTGT ATGTTTATCC
  TTGAGGAGGC TACATAGTAG AGATTAAAAT TACTGTATTG CAGAAACTGG GGCCTGGGAC
  TCATCATCCT CCTGCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322492734	CHEV_8_11637284	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229996505					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11687284 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	1527 bp upstream
Cpgi20087	CpG island 20087	617 bp distal
Gm45592	predicted gene 45592	within coordinates
Gm64331	predicted gene, 64331	within coordinates
Mir7238	microRNA 7238	1548 bp upstream
Rr186041	regulatory region 186041	283 bp distal
Rr400761	regulatory region 400761	1266 bp downstream
Tssr80391	transcription start site region 80391	1639 bp upstream
Tssr80392	transcription start site region 80392	1561 bp upstream
Tssr80393	transcription start site region 80393	1541 bp upstream
Tssr80394	transcription start site region 80394	1519 bp upstream