rs229997537 SNP Detail

Summary

• ID
  rs229997537
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105277894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCAGGAT TTATAAACAT
  GGGAATTTCC TTAGGATAGA TCATTGGAGC CTGGTGCAAA ATGGAGAACT TCTTTTACCA
  GCAGGGCTTC CCCTTCCCTG ACATTGTCTG GGGATCCCTA CTCCCCACAC CCTCTACCTG
  GGGAAGGTTG AGCAGTCCTT GGCAGACCTA AAAAATTCCT CCCCCACCCC ATCAAAAACC
  M
  CCCAGCAAGT ACCTGGGATT CCTGGACTGC CTCTCCATGC AAATGCAACA ATCAAAGCAA
  TTTAAACCCT AGCCAATGAT TTTCATTTGC TCTGAAACTC ATTCTAATTC TCCAAGGTCC
  ATATATAACC CCTGGTTCAC CCTGAATAAA GTGTATGCTT TCCACCCCAT CCCCAACTCC
  AAATAAAGCC ATGTGTACAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366134812	MGP_WTSI_5_105559047	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229997537					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366134812	MGP_WTSI_5_105559047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105277894 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	1744 bp downstream
Tssr52267	transcription start site region 52267	1299 bp downstream
Tssr52268	transcription start site region 52268	1344 bp downstream
Tssr52269	transcription start site region 52269	1406 bp downstream
Tssr52270	transcription start site region 52270	1587 bp downstream
Tssr52271	transcription start site region 52271	1710 bp downstream
Tssr52272	transcription start site region 52272	1769 bp downstream
Tssr52273	transcription start site region 52273	1839 bp downstream
Tssr52274	transcription start site region 52274	1867 bp downstream
Tssr52275	transcription start site region 52275	1887 bp downstream
Tssr52276	transcription start site region 52276	1916 bp downstream
Tssr52277	transcription start site region 52277	1946 bp downstream
Tssr52278	transcription start site region 52278	1968 bp downstream