rs230005359 SNP Detail

Summary

• ID
  rs230005359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10376716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCAGGTGT CCCACCAGAA
  GCCCAGCGAG CTTCGTCACT CGCATTCCTG TAGATTGCAG CTGGTAGATC CCCGGCAGTC
  CAAACTTAAC TCCCAGCATT TTTGGGTGTG GTACGGGCCC AAAGAAAACC TCTTCTTCTC
  TCCCCCAAGA ACAGATTTTT TTTTTTTTGA GAGTCTTCAT ATAAAAGCAC AATTAAAGTA
  Y
  AGGGTGGGGT AGACCAGACG GGACCTTCGA TTTTGTTTTT AGGGTCCCCC ATTCTCCTCA
  CTTCAAAAAC TCTTGGACGG GTAAAGCACG AGATTATGCT CTAGGTAGAC CAGGGGATTG
  CAAACCTAGA AAACAAACAA CAGCTGAGAA ATTGGGGTGT GAGTCCAGTT GTCGGGGCAA
  ATGGGTGTTC GGGTACGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353068960	MGP_WTSI_2_10293532	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230005359					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353068960	MGP_WTSI_2_10293532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10376716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11193	CpG island 11193	187 bp distal
Cpgi11194	CpG island 11194	279 bp proximal
Cpgi11195	CpG island 11195	1938 bp proximal
Gm74532	predicted gene, 74532	within coordinates
Rr551679	regulatory region 551679	1384 bp distal
Rr551680	regulatory region 551680	960 bp distal
Rr551681	regulatory region 551681	41 bp proximal
Rr551682	regulatory region 551682	556 bp proximal
Rr551683	regulatory region 551683	617 bp proximal
Rr551684	regulatory region 551684	758 bp proximal
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16083	transcription start site region 16083	1388 bp downstream
Tssr16084	transcription start site region 16084	617 bp downstream
Tssr16085	transcription start site region 16085	550 bp downstream
Tssr16086	transcription start site region 16086	291 bp downstream
Tssr16087	transcription start site region 16087	431 bp upstream
Tssr16088	transcription start site region 16088	521 bp upstream
Tssr16089	transcription start site region 16089	646 bp upstream