rs230006172 SNP Detail

Summary

• ID
  rs230006172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79407459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTGACC GCTGATTCTG
  CTTGTCTGGT AATGTTATAA GTAAGTGGGC TTGAAGAGAC ATAAACAGCT GGTGTTGCTT
  GTTCAGGAGT GATTTGGGCA GGTGATGCTT GCTGTCCAGA AGAAATGTTC TTGAATCTTG
  TTGTCTGACT CAAAGCATTC CCTGCTGTGT TTTGAGAATC AGTTGTAACA TATAACGACG
  R
  TGTGATTAAA GTAGACAGTG ATTGCTGCTC TGTTGTAATT GCTTCTGTCT CTGAGAAAAA
  CGTATTGTCC AGGTATTGAC AAAGCACAAT GAAGACCAGA TACTTGAATT CCATTTCAGA
  TGTTTTCTCC TTACCAGTGA TTTCACAATG AAAGAAAAAG AAATATGGTT AGCTATCACC
  TGGCGTCTAG TTACATTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383980582	MGP_WTSI_11_79330135	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230006172					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383980582	MGP_WTSI_11_79330135	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79407459 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	1712 bp distal
D11Bhm167	DNA segment, Chr 11, Boehm 167	1902 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	within coordinates
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	1052 bp upstream
Tssr109487	transcription start site region 109487	854 bp upstream
Tssr109488	transcription start site region 109488	665 bp upstream
Tssr109489	transcription start site region 109489	361 bp upstream
Tssr109490	transcription start site region 109490	304 bp upstream
Tssr109491	transcription start site region 109491	270 bp upstream
Tssr109492	transcription start site region 109492	221 bp upstream
Tssr109493	transcription start site region 109493	203 bp upstream
Tssr109494	transcription start site region 109494	186 bp upstream
Tssr109495	transcription start site region 109495	150 bp upstream
Tssr109496	transcription start site region 109496	129 bp upstream
Tssr109497	transcription start site region 109497	78 bp upstream
Tssr109498	transcription start site region 109498	36 bp upstream
Tssr109499	transcription start site region 109499	within coordinates
Tssr109500	transcription start site region 109500	20 bp downstream
Tssr109501	transcription start site region 109501	60 bp downstream
Tssr109502	transcription start site region 109502	86 bp downstream
Tssr109503	transcription start site region 109503	161 bp downstream