rs230009595 SNP Detail

Summary

• ID
  rs230009595
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7355194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTACAAG CCCAACTCTA
  CAGGAAATGC ACACCTTTAA GAAAGGTATA TGAACTATAA AATAATAGCA CTTAAAAAAA
  CCTGCAGAGC CACAGGAAGT AAAGCAATGG TTGAGAACGG AAACAGTGTG GGGTGACATG
  ACTCAGTGAC AGAGACCCTA CTTTCCATGG ATGAAGCCTT GGGTTTTCCT CCAACACCCA
  S
  TACAAATAAA GTAAACTCAA TTTTAGAACT CTGCTCAAGA GAGATATTTT ATGGTATGTC
  AATGCTTTTA TTATCCTTTT GGGGTGACTG TTATACCCTT TCTGTTTGTC CTCATAGATG
  AGAAGTACTG GTTAATAAAC AACTTAGTAC CAGAGCCACA CTATCCCAGG AGCATATATT
  CCCTGGGCTT CTCTGCATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560373	MGP_WTSI_9_7355194	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230009595					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560373	MGP_WTSI_9_7355194	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7355194 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	1648 bp downstream
Tssr83721	transcription start site region 83721	1945 bp downstream
Tssr83722	transcription start site region 83722	1664 bp downstream
Tssr83723	transcription start site region 83723	1617 bp downstream
Tssr83724	transcription start site region 83724	1298 bp downstream
Tssr83725	transcription start site region 83725	1161 bp downstream
Tssr83726	transcription start site region 83726	1066 bp downstream
Tssr83727	transcription start site region 83727	396 bp downstream
Tssr83728	transcription start site region 83728	371 bp downstream
Tssr83729	transcription start site region 83729	362 bp downstream
Tssr83730	transcription start site region 83730	110 bp upstream
Tssr83731	transcription start site region 83731	124 bp upstream
Tssr83732	transcription start site region 83732	165 bp upstream
Tssr83733	transcription start site region 83733	202 bp upstream
Tssr83734	transcription start site region 83734	630 bp upstream
Tssr83735	transcription start site region 83735	652 bp upstream
Tssr88069	transcription start site region 88069	1689 bp upstream
Tssr88070	transcription start site region 88070	416 bp upstream
Tssr88071	transcription start site region 88071	221 bp downstream