rs230011454 SNP Detail

Summary

• ID
  rs230011454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56783250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTACGG GCCAAGTCGC
  CCGCGCGCGT CCTCATCCCT CCTGGACCCT GTCTCTACCG GTTCCCGTTT CTGTGGGTCT
  CTGTCCCTCC GGGTCCACAA CCCTCGCGGT CCCCATTTCT CCAGCTCCAT CCCTCCAGGT
  CCTCCACATC CCTCTCCTTC TTGCAGAATC CGATTACGGC TGCAGCCCGG ACCCCCTTCG
  R
  AGCACAAAGG CGGAGAAGCT TGGAAGCACA AAGCCGGCGC CGCCCACCCC GCCCCCTGTG
  TCCCCCGTGC GCCCCGTGCA CCCCGGTACC TGCGGGCTCC GCATGCTGCT CCCGGCACCG
  GGTCGGCCCG GGCTCCGGCG GCTCCGCGTG TGCGCGCGGC CCGAGCTGCC TGGCGGGCGG
  GGCAAAACCC CACTGCGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398558539	MGP_WTSI_17_56615673	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230011454					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398558539	MGP_WTSI_17_56615673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56783250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9361	CpG island 9361	1531 bp distal
Cpgi9362	CpG island 9362	within coordinates
Gm9258	predicted gene 9258	within coordinates
Gm32822	predicted gene, 32822	within coordinates
Ptprs	protein tyrosine phosphatase receptor type S	within coordinates
Rr529099	regulatory region 529099	179 bp proximal
Rr529100	regulatory region 529100	201 bp proximal
Rr529101	regulatory region 529101	1877 bp proximal
Tssr148809	transcription start site region 148809	116 bp downstream
Tssr148810	transcription start site region 148810	212 bp downstream
Tssr148811	transcription start site region 148811	236 bp downstream
Tssr148812	transcription start site region 148812	257 bp downstream