rs230012095 SNP Detail

Summary

• ID
  rs230012095
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28449303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTCTTCT GTCTCCTGAA
  TGCTGGGATT AAAGGTGTGC ACCTGGCCAT GTATGGCTTC TTAGAAGTCC CTGGAGTACT
  GGAAGACATC TCTTTACTAT TGGGGCCTGC TAGGGGGTAG AGACAGACCC AGTGTGGCAC
  CTGTCTGTCT TCTTCAGGAG CTCAGCCTTG CCTCACAAGG GCCTTCCTCT TCCTCCCTAC
  R
  TGCCTCCCAC CCAGGAGCAC CACTCACACT CCTGCTTTTT CACGGGCAAC TTGTAGGCCA
  GTGTCAAGGC CCGGGGATCT GTGATCTTCA GACACGCAGC CATCTTGCCA GTATCCTCTG
  TGGGGCATCC TACCTTCTTA GCAATCTAAG GAAAGGCAGA GGCAGGAGGT TAGAGAAGGC
  CAGCATCGAG GTTTGGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353478949	MGP_WTSI_2_28414811	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230012095					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353478949	MGP_WTSI_2_28414811	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28449303 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Rr553836	regulatory region 553836	1475 bp proximal
Tssr16958	transcription start site region 16958	1664 bp downstream
Tssr16959	transcription start site region 16959	1494 bp downstream
Tssr16960	transcription start site region 16960	1359 bp downstream
Tssr16961	transcription start site region 16961	1274 bp downstream
Tssr16962	transcription start site region 16962	1238 bp downstream
Tssr16963	transcription start site region 16963	1263 bp upstream
Tssr16964	transcription start site region 16964	1657 bp upstream
Tssr23253	transcription start site region 23253	1602 bp upstream
Tssr23254	transcription start site region 23254	1515 bp upstream
Tssr23255	transcription start site region 23255	1469 bp upstream
Tssr23256	transcription start site region 23256	1299 bp upstream
Tssr23257	transcription start site region 23257	1269 bp upstream
Tssr23258	transcription start site region 23258	1237 bp upstream
Tssr23259	transcription start site region 23259	1219 bp upstream
Tssr23260	transcription start site region 23260	1209 bp upstream
Tssr23261	transcription start site region 23261	1168 bp upstream
Tssr23262	transcription start site region 23262	65 bp downstream
Tssr23263	transcription start site region 23263	105 bp downstream
Tssr23264	transcription start site region 23264	311 bp downstream
Tssr23265	transcription start site region 23265	382 bp downstream
Tssr23266	transcription start site region 23266	562 bp downstream
Tssr23267	transcription start site region 23267	588 bp downstream
Tssr23268	transcription start site region 23268	1230 bp downstream
Tssr23269	transcription start site region 23269	1296 bp downstream
Tssr23270	transcription start site region 23270	1367 bp downstream
Tssr23271	transcription start site region 23271	1889 bp downstream
Tssr23272	transcription start site region 23272	1913 bp downstream
Tssr23273	transcription start site region 23273	1943 bp downstream
Tssr23274	transcription start site region 23274	1973 bp downstream