rs230023457 SNP Detail

Summary

• ID
  rs230023457
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:85387707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAATGGT AAGGAACAAG
  GTTTGTTGAA ACTGTATGAT TCTCAGTTAT TTTGACTATG CTGGAACGGA GGGAAGCAGA
  TAATATACCT GTTTATAAAG CGGATATGCT GTTGTGCACG CCTACTGTCA AAGGCAAATG
  CTCTTCAACT GAACTGAAAA GCATGTTGTC CAGTTTGGTT GTTTTGGGCA TGATCAAAAT
  R
  ATCGAAAGGA CTTGAAAGAA TTTCAGTTCT ACAGAGCTTA AGTTTATACT TGTTCTTGGA
  AACAAAAACA TGGACAGAAT GCTCTATTTT CTCCTCTCTG AAAAATTGAC ATTTTTCAGA
  AAAGAAAATA GAAATCTAAT AGAGCGGCTG TCACTGCTCC TTAGGGGGGA AGGCACACGT
  CAGAAAACAG GAGTCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386733660	MGP_WTSI_12_86681883	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230023457					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386733660	MGP_WTSI_12_86681883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85387707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4894	CpG island 4894	1264 bp distal
Nek9	NIMA (never in mitosis gene a)-related expressed kinase 9	1571 bp upstream
Rr387556	regulatory region 387556	1808 bp upstream
Rr469855	regulatory region 469855	1081 bp distal
Rr469856	regulatory region 469856	149 bp proximal
Rr469857	regulatory region 469857	393 bp proximal
Rr469858	regulatory region 469858	1481 bp proximal
Tmed10	transmembrane p24 trafficking protein 10	mRNA-UTR
Tssr114383	transcription start site region 114383	1485 bp downstream
Tssr114384	transcription start site region 114384	1232 bp downstream
Tssr117066	transcription start site region 117066	1606 bp upstream
Tssr117067	transcription start site region 117067	1542 bp upstream
Tssr117068	transcription start site region 117068	1401 bp upstream
Tssr117069	transcription start site region 117069	640 bp downstream
Tssr117070	transcription start site region 117070	674 bp downstream