rs230026674 SNP Detail

Summary

• ID
  rs230026674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128655807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATCTTCC TGCCTCTGAC
  TCTTCAGTGC TGGGATTATA GGCACTCATG GTTGTACATG GCCACATCTG GCTTTTACAT
  ATGTGCAAGG GATTGAACTC AAGTCCTTAT CCTTTATGGC AAGCACTTGA CTAAACCATT
  TCCCCAACCC CTAGTACCTT TTCCCTGGTT AGTAGAGCCA TTTCCAACCC AGCATCTCCT
  Y
  CACACCCAGA CTCACAGTAC AATAGGAGAG ATGCTGAGGA ACTTTCGCGA GGAGGTAAAC
  TGTAGTCCAT AGTCCATCTG CTCCCAATGT GTCAAAAGCC GAGCCTTTCC TTGGTCAGGG
  GTCTCAAAGG GCGTCCCTTT GACTGTATGT AGGAAGATAT ACATTGCCTG GGAAGAGGGA
  AAGGGACAGT ATAAGGGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382211283	MGP_WTSI_10_128256994	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230026674					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382211283	MGP_WTSI_10_128256994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128655807 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	1516 bp proximal
Dnajc14	DnaJ heat shock protein family (Hsp40) member C14	490 bp downstream
Ormdl2	ORM1-like 2 (S. cerevisiae)	within coordinates
Rr402366	regulatory region 402366	1583 bp upstream
Sarnp	SAP domain containing ribonucleoprotein	1826 bp upstream
Tssr96457	transcription start site region 96457	264 bp downstream
Tssr96458	transcription start site region 96458	1788 bp upstream
Tssr96459	transcription start site region 96459	1807 bp upstream
Tssr96460	transcription start site region 96460	1846 bp upstream
Tssr96461	transcription start site region 96461	1949 bp upstream
Tssr99967	transcription start site region 99967	1638 bp downstream