rs230032413 SNP Detail

Summary

• ID
  rs230032413
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48665039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTATT ACTCCTACCT
  TGAGATACTT CTTGCCAAAA ACCATTTTCA ATATCACAGC TAACATCATA GTAAGGCATG
  TGAGATGCCT GGTTAGGAAA CATAGGGAGA ATGGTAAAAC AGGCTGAACC TCCACCTCTA
  ATCCTCACAA ACAGAATGCA TTGAGTACAT TGTTTGACAT GAAATATATA TATATATATA
  T
  AAATACCATA CTTAAAAAAA AACTTTTAAA AGATTTATTT ATTTATTTAT TTATTTATTT
  TATTTATTTA CATTTCAAAT GTTATGTCTT TTCCCGGTTC CCCCCACCCA GAAACTCCCT
  ATCCCAGCCT CCCTCCCCCT GCCTATATGA AGGTGTTTCC CCCAACCACC CACCCACTCC
  CACCTCCCTG CCCTGATATT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss396216329	MGP_WTSI_16_48844789	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs230032413					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396216329	MGP_WTSI_16_48844789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48665039 () rs orientation: forward

Symbol	Name	Function Class
Retnla	resistin like alpha	215 bp downstream
Tssr138684	transcription start site region 138684	1981 bp downstream
Tssr138685	transcription start site region 138685	1940 bp downstream
Tssr138686	transcription start site region 138686	1821 bp downstream
Tssr138687	transcription start site region 138687	1779 bp downstream
Tssr138688	transcription start site region 138688	1081 bp downstream
Tssr138689	transcription start site region 138689	493 bp downstream
Tssr138690	transcription start site region 138690	436 bp downstream
Tssr138691	transcription start site region 138691	383 bp downstream