rs230032907 SNP Detail

Summary

• ID
  rs230032907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23445926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTGCAGG GAACTTAGTA
  GGACTGCTTT GATGTTTGAC ACCTCCCTGA CTCAGAGGCC AAGGAAGGCT CAGTGAGCTT
  CATCTTAACA AACTACACAG AAAGTAGCCA ACTCTAGGCA GACACCCGAG TTCTTAACAC
  AATACGGTCG GTCTTCCATA CCCACATCTC TCCTTGTTCT CTCCCTTTCC CTATGATTGA
  Y
  CTTTGGTCAT GTCAACAAGT ATTGAACCAT AAGCTAAGTA CCACGTGTCT TGGTAAAGTC
  AAGACAACTA TGAACAAAAA GGTCCATCAA CAGGTAAAGA GATAAAATGT GCTCTGTCCA
  CACAATGCAC ATAAAAACAG CATAAAGTAC TAAAACATGG TACAAGGTGG AATGAAAGCA
  GAGAGTTTTA TGTATGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382708806	MGP_WTSI_11_23395926	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230032907					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382708806	MGP_WTSI_11_23395926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23445926 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	1835 bp upstream
Ahsa2	AHA1, activator of heat shock protein ATPase 2	within coordinates
Cpgi2649	CpG island 2649	1438 bp proximal
Gm47279	predicted gene, 47279	1823 bp downstream
Rr443827	regulatory region 443827	1319 bp proximal
Rr443828	regulatory region 443828	1994 bp proximal
Tssr100626	transcription start site region 100626	1809 bp upstream
Tssr100627	transcription start site region 100627	1819 bp upstream
Tssr100628	transcription start site region 100628	1870 bp upstream
Tssr100629	transcription start site region 100629	1884 bp upstream
Tssr100630	transcription start site region 100630	1913 bp upstream
Tssr107128	transcription start site region 107128	1941 bp downstream