rs230049430 SNP Detail

Summary

• ID
  rs230049430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124155006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCCCCGG GGGAGGAGAA
  AAAGGAGCCC GATATTCTAG GCCCCAATAG GACGGCCCGT GGAGGGCCAA CATACAGAGA
  TCTGGTGTGA GGTCAGGCCA CCAAGTCCAC AGAGGGTGAT TGCCGGTTAT TGCCCACACC
  GTTTCTCGGT CTCCATTAGT CACTTCCCAG GAGAGGTTAA AAACCTGGTG GGGGCTGTTT
  Y
  CCAACGCAAC GGGGTTGACC CCTCCGAGAA TCAGAAGGAC AATTAGGGGG CCCCACGGGT
  TAACCTGATT TTTAAAGGGT TTTGAGAGCG TTGTACTCTC CATGATGGTT TTATCGGGGG
  TGTGGTCGCT GCCTTGACGT GGGCGGCGTG TATCCATGCA GAGATGCCGT CTACCTTGAG
  AGCGGTGGGG GTGGTCAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	ST/bJ
ss376343708	MGP_WTSI_8_125952167	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	ST/bJ
rs230049430					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376343708	MGP_WTSI_8_125952167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124155006 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	787 bp upstream
Tssr79965	transcription start site region 79965	143 bp upstream
Tssr83353	transcription start site region 83353	1528 bp upstream
Tssr83354	transcription start site region 83354	701 bp upstream
Tssr83355	transcription start site region 83355	608 bp upstream
Tssr83356	transcription start site region 83356	538 bp upstream
Tssr83357	transcription start site region 83357	419 bp upstream
Tssr83358	transcription start site region 83358	155 bp upstream
Tssr83359	transcription start site region 83359	698 bp downstream
Tssr83360	transcription start site region 83360	805 bp downstream
Tssr83361	transcription start site region 83361	1179 bp downstream
Tssr83362	transcription start site region 83362	1328 bp downstream