rs230050526 SNP Detail

Summary

• ID
  rs230050526
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88748138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGGACGC CACCTTCCCC
  CCCACCCGCC TGCAGGACGA CAGCTCGGAG GGGCGGCCGC CGCCCTGGTA GGAGGCGGGA
  CGAGGCAAGG GCGGGCTGCG GGAGGCGGGA CGGAAGGAGG GGCGGGGCCA AGCGCCTTGG
  CGCCGCGTTG TCATGGCAGC GGGGCGGGGA GGAGGGGAGG AAGCGAGCAG GCGGGAGGGG
  T
  GGGGGGGGGG GGGATGTGGT GCTGCGGCGG CCGCCACCGC AGCTGCCACT GCCTGCTCGC
  GCCTGGGTGT CCCGGAGGCG GCTGCTGGGA GCCACGGGAG CAGCTGCGGT GCTCTGCCAT
  ATTGTGTCTG GCCCGGCCCG GCCCTCGCCT CTGGTTCGCG GCGGCTGAGT GACGGTGAGT
  CCCCGGGGTC GCGCGGCGCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss399389867	MGP_WTSI_17_88840050	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs230050526					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399389867	MGP_WTSI_17_88840050	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88748138 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9640	CpG island 9640	within coordinates
Foxn2	forkhead box N2	1 bp upstream
Rr340320	regulatory region 340320	within coordinates
Rr405533	regulatory region 405533	46 bp downstream
Tssr146228	transcription start site region 146228	4 bp upstream
Tssr146229	transcription start site region 146229	32 bp upstream
Tssr146230	transcription start site region 146230	361 bp upstream
Tssr146231	transcription start site region 146231	814 bp upstream
Tssr149806	transcription start site region 149806	1110 bp downstream