rs230053163 SNP Detail

Summary

• ID
  rs230053163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAagcta aactaatggt ggcacacacc
  tgtaatctca gcacatggga ggcagaggca gaaggttatc ctcaactata aagcaagttt
  gaggccagcc caggatatat gagaccctgc ttcaaaaaac aaaTTAAAAA AAaggaggag
  R
  aagaggagga ggagAGGACG ATGACAAAAA ACCCTCATCA ctgggaagat atagttcatt
  gctagagctt gtttagcaag gtgctaagtt ccatccctaa caccacaaaa aTAAAAATCC
  TCAAAACAAC CCTAATATAA GAACTAATAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325366951	CHEV_17_33776455	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230053163					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858484 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Rr525901	regulatory region 525901	294 bp proximal
Tssr143785	transcription start site region 143785	1698 bp downstream
Tssr143786	transcription start site region 143786	1680 bp downstream
Tssr143787	transcription start site region 143787	1400 bp downstream
Tssr143788	transcription start site region 143788	1387 bp downstream
Tssr143789	transcription start site region 143789	1369 bp downstream
Tssr143790	transcription start site region 143790	1689 bp upstream
Tssr147440	transcription start site region 147440	401 bp downstream