rs230054437 SNP Detail

Summary

• ID
  rs230054437
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85528936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGTCC TTTGGGACAA
  ACTGAGCATT TTGGATGCAT TGAAAAATAC ACTGTGGGCT CACAGACTCC GCTGTCCCTG
  TTGTCGCTTG CCACGGCCAT GGTCAGTCCC ACTTCGGTGC TGATGGTGTG AGCCTTTGCT
  GACAAAATTC CAAAGGCAAC CAAAAAACCA TTCATGATCT GAGCACCAGA GAGAAAACTT
  R
  GGCCGTAAGA GCTCCCTTTC ACGGCGTTAT TTCAGGATTC ACAGGCCAGG GTGGCGACTT
  CGCATAATGG CAGCGGATCC ATCTGCAGGG AGAGATTTGA GGGTGAGAAC TTTGTCCTGA
  AGCATTTGGG TCCTGACATC TTGTCCGTGG CGAGCACTGA ACAATACACA AACAGTGCCC
  AGTTCCTCAT CTGCACTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss394811549	MGP_WTSI_15_85475165	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs230054437					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394811549	MGP_WTSI_15_85475165	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85528936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7486	CpG island 7486	1240 bp proximal
D130051D11Rik	RIKEN cDNA D130051D11 gene	within coordinates
Gm62280	predicted gene, 62280	within coordinates
Lncppara	long noncoding RNA near Ppara	1366 bp upstream
Rr507251	regulatory region 507251	624 bp proximal
Rr507252	regulatory region 507252	995 bp proximal
Rr507253	regulatory region 507253	1716 bp proximal
Tssr132525	transcription start site region 132525	954 bp upstream
Tssr132526	transcription start site region 132526	1344 bp upstream