rs230064017 SNP Detail

Summary

• ID
  rs230064017
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92112453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGAGAAG TCTGATTATT
  GCCTCCTGTA TATGTCAAAG TAATTGTAGC TCCAGAACCG TAGACGTGCC AGCTGTTCTC
  CGCATGAGTT CATAAGGCAT TTATAGACCT GCTATGTATG AGTTGCTATA CAAGTTATTT
  TCAGGTTTGA CAGAAAGGAG GAAGTATAAG AGGCCCTCCT ATTCATTGAA GACAAATTCT
  R
  GGTATCACCT CAGAAAGGGA AAGGCCAAAG GTATTCTTCA ACCGCTGTAG AGAAAGAAAA
  ACCTTTAATT GCAAATCTTG CTACAGGCTA AATGTCCACT GAAACATTCA TATGCTACTA
  TAAAAATTTA AGGGCTGGTG AGATGGCTCA GTGGGTAAGA GCACCCGACT GCTCTTCCAA
  AGGTCCGGAG TTCAAATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365873181	MGP_WTSI_5_92393620	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230064017					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365873181	MGP_WTSI_5_92393620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92112453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1193 bp distal
Rchy1	ring finger and CHY zinc finger domain containing 1	1526 bp upstream
Rr125457	regulatory region 125457	453 bp distal
Rr367874	regulatory region 367874	696 bp downstream
Thap6	THAP domain containing 6	within coordinates
Tssr47272	transcription start site region 47272	1684 bp downstream
Tssr47273	transcription start site region 47273	1652 bp downstream
Tssr47274	transcription start site region 47274	1636 bp downstream
Tssr47275	transcription start site region 47275	1267 bp downstream
Tssr47276	transcription start site region 47276	1235 bp downstream
Tssr51832	transcription start site region 51832	1854 bp upstream
Tssr51833	transcription start site region 51833	1707 bp upstream
Tssr51834	transcription start site region 51834	1489 bp upstream
Tssr51835	transcription start site region 51835	1457 bp upstream