rs230068090 SNP Detail

Summary

• ID
  rs230068090
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:77829859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCCCCAA CCCCAAAGGA
  CAGCGCCTGA GGTATAATGG CATGAGGATG CCCTCTGGCT TCCCCAAGCC CACAGGTACA
  CAACTACACA GAGACTAGAT TCCTACCCTT CCTGTCCCTT CTCTCCCCAC CTGTTGTGTA
  TGACATTCAG TTGTAATTGT AGTCAGGTAG TAAGGGGTAC CCCAGGACTC CTTATTGCCA
  S
  AGAGACTTTA GTGCTTTTGG CTTCACATCT TACATTGTTT GAGGTTTACG ATTTTTCAGT
  GTTGATTCTG GCTTGCTTTT TCTAACTCGA ATAACCATTT TCTTGAAAAA CACTTGTGAC
  TTTTAAGTGC GTTCTTAGTT CCTATATGAG GCTAGAAATG TCCCCTCATG CTCGGGATGC
  TTTCTGCTGG CTGATCTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378146011	MGP_WTSI_9_77770384	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230068090					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378146011	MGP_WTSI_9_77770384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77829859 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	Intron
Rr683431	regulatory region 683431	639 bp distal
Tssr86221	transcription start site region 86221	1096 bp downstream
Tssr86222	transcription start site region 86222	1077 bp downstream
Tssr86223	transcription start site region 86223	1050 bp downstream
Tssr86224	transcription start site region 86224	831 bp downstream
Tssr86225	transcription start site region 86225	658 bp downstream
Tssr86226	transcription start site region 86226	691 bp upstream
Tssr86227	transcription start site region 86227	740 bp upstream
Tssr86228	transcription start site region 86228	1088 bp upstream
Tssr86229	transcription start site region 86229	1135 bp upstream
Tssr86230	transcription start site region 86230	1847 bp upstream