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rs230070881 SNP Detail
Summary
  • ID
    rs230070881
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101169987 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGGTGGGAC AGCCGGGCTC
ACCAGGATCT GCACCTAATT CCCACTCCCA CTTCTAGATT CCAGCCCCTA AATGCAGGTG
TAGCTTCCAC CTGCTTTCTG GAAAGGGTGG GGTGAGGAGG GCCTTGTGGG GTCCCCATCA
TGGTCTGAGT TCTCTGTCTC TGACTTCTCA GAAGTGGGGT GTATAGTGTG CCCTGAAGAC
Y
CTCCTTCTCC AGGTCTCCTT TCTCAATACT GCCCGTCTCT CTGCAGTTGT ACGGACAGAC
AGCCTAAAAG GGCGGCGGGG CCGGCTACCT TCAAAACCCA AGCAGCCTCC AGATGCCTCC
CCTACCAATC TTCTCACTTC CCTCATCCGG GCACACTTGG ACTCCGGGCC TAGCACTGCC
AAATTGGACT ATTCCAAGGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395193008 MGP_WTSI_15_101102537 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs230070881 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395193008 MGP_WTSI_15_101102537 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101169987 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Tssr133223 transcription start site region 133223 2000 bp downstream
Tssr133224 transcription start site region 133224 1982 bp downstream
Tssr133225 transcription start site region 133225 1966 bp downstream
Tssr133226 transcription start site region 133226 1948 bp downstream
Tssr133227 transcription start site region 133227 1935 bp downstream
Tssr133228 transcription start site region 133228 1919 bp downstream
Tssr133229 transcription start site region 133229 1881 bp downstream
Tssr133230 transcription start site region 133230 1822 bp downstream
Tssr133231 transcription start site region 133231 1796 bp downstream
Tssr133232 transcription start site region 133232 1769 bp downstream
Tssr133233 transcription start site region 133233 1748 bp downstream
Tssr133234 transcription start site region 133234 1722 bp downstream
Tssr133235 transcription start site region 133235 1680 bp downstream
Tssr133236 transcription start site region 133236 1641 bp downstream
Tssr133237 transcription start site region 133237 1610 bp downstream
Tssr133238 transcription start site region 133238 1592 bp downstream
Tssr133239 transcription start site region 133239 1529 bp downstream
Tssr133240 transcription start site region 133240 1461 bp downstream
Tssr133241 transcription start site region 133241 1452 bp downstream
Tssr133242 transcription start site region 133242 1440 bp downstream
Tssr133243 transcription start site region 133243 1419 bp downstream
Tssr133244 transcription start site region 133244 1389 bp downstream
Tssr133245 transcription start site region 133245 1343 bp downstream
Tssr133246 transcription start site region 133246 1313 bp downstream
Tssr133247 transcription start site region 133247 1232 bp downstream
Tssr133248 transcription start site region 133248 1214 bp downstream
Tssr133249 transcription start site region 133249 357 bp downstream
Tssr133250 transcription start site region 133250 327 bp downstream
Tssr133251 transcription start site region 133251 293 bp downstream
Tssr133252 transcription start site region 133252 40 bp upstream
Tssr133253 transcription start site region 133253 51 bp upstream
Tssr133254 transcription start site region 133254 71 bp upstream
Tssr133255 transcription start site region 133255 104 bp upstream
Tssr133256 transcription start site region 133256 145 bp upstream
Tssr133257 transcription start site region 133257 163 bp upstream
Tssr133258 transcription start site region 133258 615 bp upstream
Tssr133259 transcription start site region 133259 632 bp upstream
Tssr133260 transcription start site region 133260 650 bp upstream
Tssr133261 transcription start site region 133261 660 bp upstream
Tssr133262 transcription start site region 133262 671 bp upstream
Tssr133263 transcription start site region 133263 692 bp upstream
Tssr133264 transcription start site region 133264 711 bp upstream
Tssr133265 transcription start site region 133265 920 bp upstream
Tssr133266 transcription start site region 133266 945 bp upstream
Tssr133267 transcription start site region 133267 986 bp upstream
Tssr133268 transcription start site region 133268 1033 bp upstream
Tssr133269 transcription start site region 133269 1205 bp upstream
Tssr133270 transcription start site region 133270 1867 bp upstream
Tssr133271 transcription start site region 133271 1916 bp upstream
Tssr133272 transcription start site region 133272 1976 bp upstream
Tssr136545 transcription start site region 136545 1796 bp upstream
Tssr136546 transcription start site region 136546 1675 bp upstream
Tssr136547 transcription start site region 136547 1600 bp upstream
Tssr136548 transcription start site region 136548 1583 bp upstream
Tssr136549 transcription start site region 136549 1558 bp upstream
Tssr136550 transcription start site region 136550 1442 bp upstream
Tssr136551 transcription start site region 136551 1337 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory