rs230071789 SNP Detail

Summary

• ID
  rs230071789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:23446612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAATTT TTTAAGTTTT
  GAAATAATTA AACATTTTTA AGGGAAGCAG GCATCTGTGG AGGAAGGGTG GCAGGTGGCA
  GCTGCATTAA GGCCCTAGTC ACAGATGCTG GTAAAAGGGC TTAACTGAGA AAGAACTGCC
  CCTCAGGCAT CTAGAGTAGT GAAGTGCAGC TTTCAGAACA TAGCAACACC AAGCACATCC
  R
  AACATCAGCT ACTGCTACTA AACGTTAAGA CTGTACACAG GGTGTCCCCA ACCTGCCTCT
  TGCCAGGACC CCCATTACCT TTCCAGGCCA GCTTGATGTT CCACTCATAG AAGAAAATAA
  GCTTCCCTTT GCGGCTGTTA CATGAAGCCT CACCTTCCAC CTGTTTCAAC TCACTGATCT
  CACATCGGCC AGCCTCATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382708823	MGP_WTSI_11_23396612	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230071789					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382708823	MGP_WTSI_11_23396612	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23446612 () rs orientation: forward

Symbol	Name	Function Class
1700030C12Rik	RIKEN cDNA 1700030C12 gene	1149 bp upstream
Ahsa2	AHA1, activator of heat shock protein ATPase 2	within coordinates
Cpgi2649	CpG island 2649	752 bp proximal
Gm47279	predicted gene, 47279	1137 bp downstream
Rr402454	regulatory region 402454	1362 bp upstream
Rr443827	regulatory region 443827	633 bp proximal
Rr443828	regulatory region 443828	1308 bp proximal
Tssr100626	transcription start site region 100626	1123 bp upstream
Tssr100627	transcription start site region 100627	1133 bp upstream
Tssr100628	transcription start site region 100628	1184 bp upstream
Tssr100629	transcription start site region 100629	1198 bp upstream
Tssr100630	transcription start site region 100630	1227 bp upstream
Tssr107128	transcription start site region 107128	1255 bp downstream
Tssr107129	transcription start site region 107129	1413 bp downstream
Tssr107130	transcription start site region 107130	1437 bp downstream