rs230076613 SNP Detail

Summary

• ID
  rs230076613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166080143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTAGTGA CAATCTTTAT
  GCTCAAGTTT CCTCATTAGG ATTAAACCAG GAATCCTGTA AAACACCCAC AAACTTGCTT
  AGGCTCTGAT AAGAAACCTC CGGATGTTAA GTCCCATCTT AATTTTCTGA TTTTTCTGGG
  TGCTAAAGGA TATAGTTCTC AAATTTCTCT CACAGAGCTT ATTACTCAGG ACTCTTAATA
  R
  CATACAAATC ACTCAAGTTA AGTAAAAGAT GAAATGTAAT GAGTGACTCT AAGACTTACT
  AAAAACGTTG AAGATCCAGA TGTAGGAGAC AAGTGGGAAC CTAGAGAGGC CACACCAGGA
  CTGCAGCTCA GATCACACCC CTGAGCAGGG TGGCCACCCA GCCTCCAACC ACCACACCTG
  GCCCCGGCCC CTGATGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087510	CHEV_1_168182705	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230076613					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166080143 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	1224 bp proximal
Gm70596	predicted gene, 70596	867 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	1565 bp upstream
Rr422555	regulatory region 422555	1129 bp proximal
Rr422556	regulatory region 422556	1538 bp proximal
Rr422557	regulatory region 422557	1630 bp proximal
Tssr9868	transcription start site region 9868	1476 bp upstream
Tssr9869	transcription start site region 9869	1521 bp upstream
Tssr9870	transcription start site region 9870	1585 bp upstream
Tssr9871	transcription start site region 9871	1612 bp upstream