rs230077288 SNP Detail

Summary

• ID
  rs230077288
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7352880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAGATT TTTGAGTGTC
  TTTGCCATAC AAATGATACA TATTTGAAAA GATAGATATA TTTATCCTGC TTGAACATTG
  TACAGTAAGT GTAGGCATCA AAAAATCACA TGGTATGCTA TAAACATGTA CAATTTCATG
  TGTAAGTTAA AGAAAATGTG ATAGTCTAAT TCACAGCTTT ATTATTTTTT TTTCTTGCTA
  M
  CTCTTAGGCA CAAACCTCTT CCTTGTTGCT GTTCATGAAC TTGGCCATTC CTTGGGGCTG
  CAGCATTCCA ATAATCCAAA GTCAATAATG TACCCCACCT ACAGATACCT TAACCCCAGC
  ACATTTCGCC TCTCTGCTGA TGACATACGT AACATTCAGT CCCTCTATGG TAAGCTGAAC
  CTCATTTGCC ATTCAATGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560313	MGP_WTSI_9_7352880	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230077288					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560313	MGP_WTSI_9_7352880	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7352880 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr2759	transcription start site region 2759	663 bp upstream
Tssr83711	transcription start site region 83711	1764 bp downstream
Tssr83712	transcription start site region 83712	895 bp downstream
Tssr83713	transcription start site region 83713	494 bp downstream
Tssr83714	transcription start site region 83714	310 bp downstream
Tssr83715	transcription start site region 83715	266 bp downstream
Tssr83716	transcription start site region 83716	within coordinates
Tssr83717	transcription start site region 83717	31 bp upstream
Tssr83718	transcription start site region 83718	51 bp upstream
Tssr83719	transcription start site region 83719	77 bp upstream
Tssr83720	transcription start site region 83720	106 bp upstream
Tssr83721	transcription start site region 83721	358 bp upstream
Tssr83722	transcription start site region 83722	560 bp upstream
Tssr83723	transcription start site region 83723	684 bp upstream
Tssr83724	transcription start site region 83724	1005 bp upstream
Tssr83725	transcription start site region 83725	1129 bp upstream
Tssr83726	transcription start site region 83726	1218 bp upstream
Tssr83727	transcription start site region 83727	1830 bp upstream
Tssr83728	transcription start site region 83728	1922 bp upstream
Tssr83729	transcription start site region 83729	1944 bp upstream
Tssr88067	transcription start site region 88067	100 bp downstream
Tssr88068	transcription start site region 88068	148 bp downstream
Tssr88069	transcription start site region 88069	595 bp downstream
Tssr88070	transcription start site region 88070	1871 bp downstream