rs230084372 SNP Detail

Summary

• ID
  rs230084372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37465572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATCTCT CCATGACCTG
  TGATCTATCT GTCTACTTAT CCATCTATCT ATCCTTCCAT CCATCTGCAC CAAATAAAAT
  CACGTACACC CAGCACCCAC TTTGAATGTA TTTATATCCT GGTACAGACT TAGCACACCC
  ACCCATCCCA CTCCTCACAC TAGACTTCCT AACCTTTTGA TTCACCGCTT CAAAATAAGA
  Y
  AAAAGTTAGC CACCCTCACA CTTGCTCTTT GGAAGAAAAA GGATGCTGTC AAACCAAGCA
  GTGTTGCGGT TATCACTGGT TTTGGCCCTT TGGGCCCATG CTGGGGCAGG ATGTGGTTTA
  GAGAGAGGCT GGAAAGCAGA GATATGGAAA GGAACATCTG GGGTATGTAG CTTGACCTTT
  TTGTGGTCTC TAAACCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377243251	MGP_WTSI_9_37361861	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230084372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377243251	MGP_WTSI_9_37361861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37465572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21585	CpG island 21585	1387 bp distal
Gm46107	predicted gene, 46107	1168 bp upstream
Nrgn	neurogranin	1531 bp upstream
Rr676716	regulatory region 676716	1383 bp distal
Rr676717	regulatory region 676717	927 bp distal
Rr676718	regulatory region 676718	within coordinates
Rr676719	regulatory region 676719	881 bp proximal
Rr676720	regulatory region 676720	1144 bp proximal
Tssr84410	transcription start site region 84410	1338 bp upstream
Tssr84411	transcription start site region 84411	1361 bp upstream
Tssr84412	transcription start site region 84412	1369 bp upstream
Tssr84413	transcription start site region 84413	1395 bp upstream
Tssr84414	transcription start site region 84414	1417 bp upstream
Tssr88858	transcription start site region 88858	1565 bp upstream
Tssr88859	transcription start site region 88859	1535 bp upstream
Tssr88860	transcription start site region 88860	1294 bp upstream
Tssr88861	transcription start site region 88861	879 bp upstream