rs230087468 SNP Detail

Summary

• ID
  rs230087468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152101567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCGGCAG TCCGGGGCGT
  CGTGCGGAAA GCGCCGCGGG GCCAGGCAAG GTCGGGACGC GGGCGGGGAG CCTCTCCGGG
  AAGGTAGAGC GGATCACAGC ACGCAGCGGG CTGGGCCGGT GAATCCTCCC GCCCGCCGGC
  CGGCCGGGTC GGGATCGCTG CAGCGGCCGC GGCCACCAGT AGGTGGCGCG CCGAGCGCCC
  R
  GCTCCCAGCG TCTCAGAGCC GAGGAAGGAG GGGACCGGAA GGAGCCGCCG CTGCTGCGGG
  AAGTGGAGGA GCGGGAGGCG GGGACCCACC TGGAAGCGCC GCGGCGCCGC TGTGGCGCTT
  CCTGCGGCGG AGGGCGCTGG AGCCAGTGCG GCGGCCGACG GCGGCCACGC GGGCGGCGCC
  TCCCGGAGCG GCCCGCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265583	MGP_WTSI_3_152058894	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230087468					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265583	MGP_WTSI_3_152058894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152101567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	1168 bp distal
Cpgi13950	CpG island 13950	within coordinates
Gm43857	predicted gene 43857	1690 bp upstream
Gm66519	predicted gene, 66519	1253 bp upstream
Rr66411	regulatory region 66411	1967 bp distal
Rr77388	regulatory region 77388	within coordinates
Tssr32410	transcription start site region 32410	441 bp downstream
Tssr32411	transcription start site region 32411	61 bp upstream
Tssr32412	transcription start site region 32412	131 bp upstream
Tssr32413	transcription start site region 32413	432 bp upstream
Tssr32414	transcription start site region 32414	734 bp upstream
Zzz3	zinc finger, ZZ domain containing 3	within coordinates