rs230088029 SNP Detail

Summary

• ID
  rs230088029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5898182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGAATAGA GAGAAGGGAC
  GAAGTGCCCT AAAGGCAGGG CCATGCCAGT ATTGCTACCA CAAGAGAATA TTCTGGAACT
  CCAGCCCCCA TCCTCCATGG ATCCAGTTTC TAGGCTGTAG TGTTTTTAGG TTCCCTTGTG
  CTTCTCCTGG TGCCAGAGGC CCCTCTGCCC GGGCTCCTTC ACACTGAGCC CTGAGACATG
  Y
  GGGTCAGGAA ACTGCACAGT CACTGCGCAT TGGCAGGAAG CCTTCCCATC CGCACTCACT
  GCCCTGGCAG GAGCTGGAAC CGATAAAGAA GCCCTGCCCC AAATTTGCCA GGCTCTTCTG
  GTGGGAAGGG GCCCATCTCT CACCCTTCCC CCACTGTTGC AAAAATCTGG AAGTGAACTC
  TTTTTATGAA AACAGATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401663590	MGP_WTSI_19_5848154	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230088029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401663590	MGP_WTSI_19_5848154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5898182 () rs orientation: forward

Symbol	Name	Function Class
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	within coordinates
Gm59610	predicted gene, 59610	395 bp downstream
Rr370436	regulatory region 370436	within coordinates
Tssr154515	transcription start site region 154515	1370 bp downstream
Tssr154516	transcription start site region 154516	1294 bp downstream
Tssr154517	transcription start site region 154517	1268 bp downstream
Tssr154518	transcription start site region 154518	1244 bp downstream
Tssr154519	transcription start site region 154519	1165 bp downstream
Tssr154520	transcription start site region 154520	341 bp upstream
Tssr154521	transcription start site region 154521	435 bp upstream
Tssr157781	transcription start site region 157781	1523 bp upstream
Tssr157782	transcription start site region 157782	1371 bp upstream
Tssr157783	transcription start site region 157783	30 bp upstream
Tssr157784	transcription start site region 157784	1789 bp downstream
Tssr157785	transcription start site region 157785	1850 bp downstream