rs230093144 SNP Detail

Summary

• ID
  rs230093144
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53531645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGTGACG CAATGAAGCG
  GGGGGGGGGG AGAGGCGGGA CTGCCGGAAG TGGGGCGGGG CCTCCTCGTT CGGGTGTGCT
  CGTTCGGGTG TGAAGTGCTT GGACTCGATT GGTAAAGACA GAATCCCTGA GACTTGTATA
  GCGACAGGCC GTGGACTTTG TGCTAGGAGA ATTAGCTCGT GGTCCTTGTC CTGGGCAGTC
  S
  TCTGGGCCCA GAGTTATTAA GATGAACGAA ATTAGGCCGG GCATGGCGGT ACAGGCCTTA
  AATCGTATTT GGGAGGCAAA AGGAGGAGGG TCTCCTGAGT TCTCTTTAGG CTAACCTGCT
  CCACATGACC AACTCCAAAC CAGCCAGGGC TACACAGTGA GAACCTGTTT CAAAACACAA
  ACAAATACAA AGTAAAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341589	CHEV_13_53472978	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230093144					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53531645 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	30 bp distal
Rr403780	regulatory region 403780	6 bp downstream
Rr480032	regulatory region 480032	within coordinates
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	244 bp upstream
Tssr122583	transcription start site region 122583	236 bp upstream