rs230096042 SNP Detail

Summary

• ID
  rs230096042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101675014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCTCCCCAC TGGTGATAAG GGACGGAGAA GAATGAGTGG
  TTTGACTTTT GGGGAAACGT GGGTTGGGGA AGTCCAGGAT AAGGCTTTGG GATGGATGTA
  Y
  GTGGATTAAG CAGAGGGGTC GCAGTTTGTC TGTTTCTTTA CCTTCTGAGT CGGAAGGCGG
  CAGGGAGCCC GGGTCCATGA GCTTTCCCTG CGGGACCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323833816	CHEV_11_101645502	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230096042					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101675014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	within coordinates
Etv4	ets variant 4	within coordinates
Gm71843	predicted gene, 71843	1561 bp downstream
Rr386582	regulatory region 386582	1732 bp upstream
Rr402993	regulatory region 402993	1085 bp upstream
Tssr110962	transcription start site region 110962	97 bp downstream
Tssr110963	transcription start site region 110963	134 bp downstream
Tssr110964	transcription start site region 110964	239 bp downstream
Tssr110965	transcription start site region 110965	272 bp downstream
Tssr110966	transcription start site region 110966	328 bp downstream
Tssr110967	transcription start site region 110967	420 bp downstream
Tssr110968	transcription start site region 110968	478 bp downstream
Tssr110969	transcription start site region 110969	625 bp downstream
Tssr110970	transcription start site region 110970	653 bp downstream
Tssr110971	transcription start site region 110971	978 bp downstream
Tssr110972	transcription start site region 110972	1014 bp downstream
Tssr110973	transcription start site region 110973	1037 bp downstream
Tssr110974	transcription start site region 110974	1064 bp downstream