rs230097217 SNP Detail

Summary

• ID
  rs230097217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127029870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GTACTTATAA TAAATAAATA
  R
  ATAAATAGAT AGATAGATAG ATAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323529108	CHEV_10_126631057	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230097217					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127029870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	1130 bp proximal
Dtx3	deltex 3, E3 ubiquitin ligase	within coordinates
F420014N23Rik	RIKEN cDNA F420014N23 gene	1248 bp upstream
Gm57007	predicted gene, 57007	within coordinates
Rr213521	regulatory region 213521	1870 bp distal
Rr224404	regulatory region 224404	330 bp proximal
Tssr96170	transcription start site region 96170	1239 bp upstream
Tssr99735	transcription start site region 99735	841 bp upstream
Tssr99736	transcription start site region 99736	1197 bp downstream
Tssr99737	transcription start site region 99737	1712 bp downstream