rs230101021 SNP Detail

Summary

• ID
  rs230101021
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCACCGC ATCCACATGG
  CATGACAGCT TCAGGTCCTG ACCGAGTTGA ATGTTCTCGC TTTCTTTGAT CATGTCGGGG
  GTGATCTGGA ATGTGGCGTT CTTCAGGGCT GCAAGGAGAT GGGGTTCGAA GAAGGCTGGA
  GCTGACCCAA GGACAGGTAT CCATGTTCCA CCCCAGCTTC TCCCCTCAAA CTGGTTGCAC
  R
  CCAATTCTGC GCGCGCGCGC GCGCGCGCAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAA ATATCTCTCA GCCTAGAAAT GGTTCCAATA GCTCAGAGAT GTTTTCATAG
  CTTTAAAGAG CTCAATGCAG AGAAGTGAGT TTGGTGCTGA CTACAGGCGT TAGTAATGAG
  CACACTTCAT CAGTGAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355135	CHEV_17_29983688	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230101021					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065717 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	within coordinates
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	117 bp distal
Rr330463	regulatory region 330463	1684 bp proximal
Rr341132	regulatory region 341132	within coordinates
Rr392501	regulatory region 392501	65 bp upstream
Tssr143596	transcription start site region 143596	208 bp downstream
Tssr143597	transcription start site region 143597	185 bp downstream
Tssr143598	transcription start site region 143598	1477 bp upstream