rs230102987 SNP Detail

Summary

• ID
  rs230102987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:12939871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATTGTA AATGAAGGAA
  TTGTGGGGTT TTGGTAATAT TTTTGTTTCT GTTAGTAGGA GAGGCACTCG AAATAATTTT
  TTTTTAACCT TAAAACCCAC CAGCCTTGCA TCTCTCTTTT TTTGTATAAT TTGACTTATG
  AAGAATTATT TTGGGTGTAC TTACGTGGGA ACTCTGTAGC CAGTAATAAA AGAGCTCATT
  M
  GCTTCATTTA TTATAAGGAT TGGTTAACCA TGACTAGGTT TGACACTTGA GCTTAATTAA
  AAATAGATAC TACAAACTCT TCTTTAGATC CTTCTAGTCT ACTAAATCAT CAGGCTGCCA
  TTTTGGCTTC AGCAAAATGT CTTTCAATTC TTAGAAGATT TAGGTATTAA GTATACAGAC
  ATAGCAACAT TTATTTTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403087116	MGP_WTSI_X_12650758	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230102987					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403087116	MGP_WTSI_X_12650758	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:12939871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22632	CpG island 22632	545 bp distal
Gm61952	predicted gene, 61952	1704 bp upstream
Rr690198	regulatory region 690198	1715 bp distal
Rr690199	regulatory region 690199	1214 bp distal
Rr690200	regulatory region 690200	1245 bp proximal
Tssr160583	transcription start site region 160583	1969 bp downstream
Tssr160584	transcription start site region 160584	1593 bp downstream
Tssr160585	transcription start site region 160585	1563 bp downstream
Tssr160586	transcription start site region 160586	806 bp downstream
Tssr163012	transcription start site region 163012	1703 bp upstream
Tssr163013	transcription start site region 163013	1065 bp upstream
Usp9x	ubiquitin specific peptidase 9, X chromosome	within coordinates