rs230106029 SNP Detail

Summary

• ID
  rs230106029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191448780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTCTTT TTAGGTGTGC
  TTTGTCACAG GTTGGGATGG GCCTTGAAAA TACACATGAG CTACATCCCT AGCATGCCCT
  GTACAGTAAA ATATGTTTGT GAACAGGTAA AGGATAATAA TAGCTATAAA GGCTAACATA
  CATGGAAATT ATTTATATAT CTATATCAAT ATCATACAGG TTCTGTGTAG AATAGGAATT
  W
  AAAAAATATT TTCACATGGC AAAAGGCAAC TTGCCTGTCA TTCCTGGATC AAAGTTGGAG
  GAAAGAGAGG GACAGTTTTA TCAAAGCATG AACATTTTTT TGGTTTGATT TTTTTTTTTT
  TTTTTTGACA AGGTCTAGTA GCCTAGGCTG GCCCAGGACT CCTGGCACTC CTGCCTTAGC
  CTCTCTGGTG CTGGGATTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352839480	MGP_WTSI_1_193540547	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230106029					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352839480	MGP_WTSI_1_193540547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191448780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1225	CpG island 1225	1036 bp proximal
Lpgat1	lysophosphatidylglycerol acyltransferase 1	1166 bp upstream
Rr426207	regulatory region 426207	676 bp proximal
Rr426208	regulatory region 426208	1231 bp proximal
Rr426209	regulatory region 426209	1311 bp proximal
Tssr10776	transcription start site region 10776	1212 bp upstream
Tssr10777	transcription start site region 10777	1325 bp upstream
Tssr10778	transcription start site region 10778	1367 bp upstream
Tssr10779	transcription start site region 10779	1402 bp upstream
Tssr10780	transcription start site region 10780	1587 bp upstream
Tssr10781	transcription start site region 10781	1710 bp upstream
Tssr10782	transcription start site region 10782	1727 bp upstream