rs230106108 SNP Detail

Summary

• ID
  rs230106108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126359870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGTCGGT GAGTGGCCAC
  TCTCTTCCTC TGTTTGTGAA GTCACTGAAA GGCTGCCTGG CTGATACCCA GCTTTCCCCT
  GGAGATCCCA GGCCTTCACA GCAGGAAGGA GCCAGCATTG TTTACATTTG GCCAGAACCC
  TCTCCTCCTC TCTCCAGTCC CTGCCAAGAC CTGGGTGGGG CCAACAGGCC TGGATTCCCC
  Y
  TTTGTAAGGC CACATCTCTC TGGCCCTCTC AGCTCAGCTT ATGACCACGT GCGCAAGACC
  AGAGTGGCCA TCAAGAAGAT CAGCCCCTTT GAGCATCAAA CCTACTGTCA GCGCACGCTG
  AGGGAGATCC AGATCTTGCT GCGATTCCGC CATGAGAATG TTATAGGCAT CCGAGACATC
  CTCAGAGCGC CCACCCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373074802	MGP_WTSI_7_133904212	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230106108					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373074802	MGP_WTSI_7_133904212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126359870 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19709	CpG island 19709	360 bp distal
Mapk3	mitogen-activated protein kinase 3	within coordinates
Rr655591	regulatory region 655591	1087 bp distal
Rr655592	regulatory region 655592	91 bp distal
Rr655593	regulatory region 655593	1817 bp proximal
Tssr69058	transcription start site region 69058	1090 bp downstream
Tssr69059	transcription start site region 69059	1047 bp downstream
Tssr69060	transcription start site region 69060	988 bp downstream
Tssr69061	transcription start site region 69061	936 bp downstream
Tssr69062	transcription start site region 69062	909 bp downstream
Tssr69063	transcription start site region 69063	99 bp downstream
Tssr69064	transcription start site region 69064	45 bp downstream
Tssr69065	transcription start site region 69065	within coordinates
Tssr69066	transcription start site region 69066	1519 bp upstream