rs230108601 SNP Detail

Summary

• ID
  rs230108601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79490138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCATCAC AGCAATAGTA
  ACCCTAACTA CAACGGTGGT CAAGAGCTCT TCAGGAAGAT CTGAGTTCAA TTCCCAGCAC
  TCACTGTTTG TAATAGGTAA TAACTGTTTG TAACTTCAGT TCCAGAGGAC CTGATGCCCT
  CTTCTGGCCT CCAAGGCATA GAAGTGGTAC ATGGACGTAC GCATAGGCAA AGCACCCACA
  M
  ACAGAAAATA AATTTGTTCT TTTTTTTTTT TTTTTTTTTT TGGTTTTTCG AGACAGGGTT
  TCTCTGTATA GCTCTGGCTG TCCTGGAACC AGGCTGGCCT CGAACTCAGA AATCTGCCTG
  CCTCTGCCTC CCAAGTGCTG GAATTAAAGG CGTGCACCAC CACGCCCTGC CAATAAATTT
  GTTCTAAATT AAAAGCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032921	MGP_WTSI_7_86985276	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230108601					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032921	MGP_WTSI_7_86985276	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79490138 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Tssr67371	transcription start site region 67371	1439 bp upstream
Tssr67372	transcription start site region 67372	1627 bp upstream
Tssr73154	transcription start site region 73154	1908 bp upstream
Tssr73155	transcription start site region 73155	1698 bp upstream
Tssr73156	transcription start site region 73156	1634 bp upstream
Tssr73157	transcription start site region 73157	1436 bp upstream
Tssr73158	transcription start site region 73158	1186 bp upstream
Tssr73159	transcription start site region 73159	1136 bp upstream
Tssr73160	transcription start site region 73160	892 bp upstream
Tssr73161	transcription start site region 73161	513 bp downstream
Tssr73162	transcription start site region 73162	530 bp downstream
Tssr73163	transcription start site region 73163	589 bp downstream
Tssr73164	transcription start site region 73164	734 bp downstream
Tssr73165	transcription start site region 73165	1295 bp downstream
Tssr73166	transcription start site region 73166	1336 bp downstream
Tssr73167	transcription start site region 73167	1544 bp downstream
Tssr73168	transcription start site region 73168	1556 bp downstream
Tssr73169	transcription start site region 73169	1584 bp downstream
Tssr73170	transcription start site region 73170	1615 bp downstream
Tssr73171	transcription start site region 73171	1686 bp downstream
Tssr73172	transcription start site region 73172	1714 bp downstream
Tssr73173	transcription start site region 73173	1730 bp downstream
Tssr73174	transcription start site region 73174	1818 bp downstream
Tssr73175	transcription start site region 73175	1839 bp downstream
Tssr73176	transcription start site region 73176	1897 bp downstream
Tssr73177	transcription start site region 73177	1927 bp downstream
Tssr73178	transcription start site region 73178	1953 bp downstream