rs230108706 SNP Detail

Summary

• ID
  rs230108706
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31804164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTACTC ATATACATAA
  AATAAATAAA TAAATACATC TTTAAAAGAA AAATAAAATC AGCAAGAGTT CTTAATAGAT
  CTTTCCTGAT TTGTATCTTT AAAAAAGAGT TACTTTGGTC ATGCTGTCAC TTCACACCAA
  TAGAACAGTG ACTAAGACAC AAGGGGGAAC AGCAAGATTC TTAGACAGAA TGTGTGTGTG
  K
  GGGGGGGGGG GATAAGCGTT AATCATAATA TTAAATGTCT TTACTCCCCC AGTAGTTTAG
  GAAGTAGTTT ATTTAAAAAA AAAAAAGAAA GAAAGAAAGT GAAAACTGGT AAGATTGCCA
  TCACTGTATT ATTGCAACTT GGCTGTTTTG GTTGGTTGGT TTTTCAATAC AGGATTTCTC
  TGTGTAGCTT TGGCTGTCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	ZALENDE/EiJ
ss395850044	MGP_WTSI_16_31985432	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	ZALENDE/EiJ
rs230108706					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395850044	MGP_WTSI_16_31985432	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31804164 () rs orientation: forward

Symbol	Name	Function Class
D16Mit103	DNA segment, Chr 16, Massachusetts Institute of Technology 103	1132 bp distal
Gm15694	predicted gene 15694	1832 bp downstream
Gm49733	predicted gene, 49733	1485 bp downstream
Rr514592	regulatory region 514592	765 bp distal
Senp5	SUMO/sentrin specific peptidase 5	within coordinates