rs230116538 SNP Detail

Summary

• ID
  rs230116538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100975641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGAGGGA TAGCTCTGCA GAGTCCAAGA
  GGAACAATTA TCATGACAGA AGTCAGCATT AGCCATCTCA GAGCAATACG CAGTTCAGAT
  GGCCTGCCTC AGCTCCCTTC ATCCTCATTC ACTCCTCTCA GAGAGGGCCA GGAATATCCA
  R
  AGCACAGGAG GAAGGGCTGG CTCTAACCCT TGCACCTCTT GGGAATTCGA CGTCCATTTT
  CCTACACACA TTTTCCTGAT TCCTCCATGC TAGTTTGGTT CCTGAATGCA TGAGTACTCC
  TACGTCCTAG CTGGCTAACA AGTTGGTGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850783	CHEV_3_100872248	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230116538					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100975641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptgfrn	prostaglandin F2 receptor negative regulator			Intron
				Noncoding-Transcript-Variant
Rr581950	regulatory region 581950			1765 bp distal
Rr581951	regulatory region 581951			182 bp proximal
Rr581952	regulatory region 581952			1847 bp proximal