rs230120062 SNP Detail

Summary

• ID
  rs230120062
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94539168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGGGGC TAAAAGCCAG
  TTTCATCTGC CCTCCAGCCC CTCTCCTCCC TGGCCCTCCA GCCTTTGCTC TTCTGACACC
  CGCAGGTTCC AGTCACTGTG TAGCCTTTAT CGTTGTATTT ACACTCTGTA TTCTACCTTC
  AATGCGGATT TCAGGCCCTA CTTGCCACCG CCCCCTTTCT GCCTTAGATA TCAGTTTCCC
  M
  TCCTAATTAA CTGGGGGTGG ATTTGAGTGA TGGTTGAAAA TTAAAACAAA ATGGGATATT
  CCTTCCTTTC CACATTTCCC CACTTAGGAG CCTCGCCCGT CCTTCCTCCT CTCTGGCTTG
  CTTCTTGCCC CATCCACTCC ACGGTTCCCG GTGAGCCTCC AGGCAGCTCT GCCTGGGGAG
  GGGTGGCCGG CAGGGAACGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375627909	MGP_WTSI_8_96336440	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230120062					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627909	MGP_WTSI_8_96336440	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94539168 () rs orientation: forward

Symbol	Name	Function Class
4930488L21Rik	RIKEN cDNA 4930488L21 gene	within coordinates
Cpgi20831	CpG island 20831	990 bp distal
Cpgi20832	CpG island 20832	160 bp proximal
Gnao1	guanine nucleotide binding protein, alpha O	within coordinates
Tssr78792	transcription start site region 78792	1977 bp downstream
Tssr78793	transcription start site region 78793	1889 bp downstream
Tssr78794	transcription start site region 78794	1762 bp downstream
Tssr78795	transcription start site region 78795	1739 bp downstream
Tssr78796	transcription start site region 78796	1726 bp downstream
Tssr78797	transcription start site region 78797	1712 bp downstream
Tssr78798	transcription start site region 78798	1697 bp downstream
Tssr78799	transcription start site region 78799	1641 bp downstream
Tssr78800	transcription start site region 78800	1589 bp downstream
Tssr78801	transcription start site region 78801	1533 bp downstream
Tssr78802	transcription start site region 78802	1446 bp downstream
Tssr78803	transcription start site region 78803	1220 bp downstream
Tssr78804	transcription start site region 78804	1192 bp downstream
Tssr82469	transcription start site region 82469	191 bp downstream
Tssr82470	transcription start site region 82470	956 bp downstream
Tssr82471	transcription start site region 82471	1037 bp downstream