rs230121500 SNP Detail

Summary

• ID
  rs230121500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:56530417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGAAA CCTACTTGAT
  CACAGTGAAT GGTTATTTTG ATGTGTTCTT GGATTCAGGT TGCCAGAATT TTACTGTATA
  TTTTTGCTTT GATATTCATT AGTGAAATTG GTCTAAAGTT CTCTTTCTTT GTTAGGTCTT
  TGTGTGGTTT AGGTATCAGA GTAACTGTGG CTTCATAGAA TGAGTAGGTA GTGTTCGTTC
  Y
  GTTTCTATTT TATGGAATAA TTTGAACAGT GTTGGCATTA TCTCTTCTTT GAAGGTTTGG
  TAGAATTCTG TGCTAAAGTA ATCTGGCCCT GGGCTGGTTT TGGTTGGGAG ACTTTTAATG
  ACTTCTTATA TTTCCTTAGA AGATATGGGA CTGTTTAGAT AGTTTACCTG CTCTTGATTT
  AATAATGGTA CTTGGTATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323314481	CHEV_10_56374127	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230121500					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:56530417 () rs orientation: forward

Symbol	Name	Function Class
Gm9795	predicted pseudogene 9795	1873 bp upstream
Gm66844	predicted gene, 66844	1606 bp downstream
Tssr93379	transcription start site region 93379	1604 bp upstream