rs230121508 SNP Detail

Summary

• ID
  rs230121508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTGCC AGGTGCTCAG
  ACACACATGG CCTCACCAAA GCTCACCCTA ACTGAGGAGA TAGGAGCTCA TTCATTTTAC
  AGATAAAATC AACTTAATGG ATTCCGTAGA GTAGTGGGGA GGGGCATGGA ATTCTTGAAC
  TCTTTGGTGG AGAGCAGAAA GAGAGGAGAA GGCACAGGGA GTCCTCGACA GTGTTATTTC
  Y
  CCCAACTGAT CTAGTGGGGC AGGGTGATGT AGGTCTCTAA CACCTTTGCC CCTGCTGGAA
  GTCCCCTGGT TTGCTACTGC AAAGCTGGGA TTTGACTGAG GCTCCTCCCC TGATACCCAC
  TGAGCCCTGA GCTCCTTTCA GCCTTTCACC AAGTTCCTAA CCCTATAGCA CAGTAGGCAG
  CATCCAGGGT CAGAGGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129389	CHEV_9_98326448	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230121508					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308082 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	336 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	1351 bp proximal
Tssr2984	transcription start site region 2984	925 bp downstream
Tssr86646	transcription start site region 86646	1197 bp downstream
Tssr86647	transcription start site region 86647	1124 bp downstream
Tssr86648	transcription start site region 86648	1094 bp downstream
Tssr86649	transcription start site region 86649	1059 bp downstream
Tssr86650	transcription start site region 86650	699 bp downstream
Tssr86651	transcription start site region 86651	516 bp downstream