rs230123980 SNP Detail

Summary

• ID
  rs230123980
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:9530576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTATGG GTATAAGGAC
  AAATGTCTAG AAGACAGTTT GATACTCTGT CTTTTAAACA AACAATAGTC CTGTGTTTTC
  CCCTATGCTC TAAGACCTCC CTGGCACGGG TTCGTGGTCA GATTTATAGT ACCAGCCATG
  AAACACTCCC CTCAAGAACT CAGGGAACAC CATGGAGGAG AGAAGGAAAG ATCAGAAGAG
  S
  CAGGAGCCAA AGAGAAATAC AGTGAAATTA TCTATTATAA AAATAATAGG ATCTTTGTGT
  TCATAATTTC ACAGAAGCTA TGGTTGTGAC ACAAGACTGG CATGAGATCA CACCAATCCA
  CATTCCAATA TGGACAGAGC AGGTGTTCAA GAGGCCACAT CCCTAGCTGA GGCCCTCCTG
  GCAGGTTGAC AAATACCAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392986046	MGP_WTSI_15_9460245	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230123980					SNP	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392986046	MGP_WTSI_15_9460245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:9530576 () rs orientation: forward

Symbol	Name	Function Class
Il7r	interleukin 7 receptor	314 bp upstream
Rr186	regulatory region 186	378 bp distal
Rr499183	regulatory region 499183	1727 bp distal
Rr499184	regulatory region 499184	344 bp distal
Tssr130647	transcription start site region 130647	1987 bp downstream
Tssr130648	transcription start site region 130648	1950 bp downstream
Tssr133703	transcription start site region 133703	782 bp upstream
Tssr133704	transcription start site region 133704	718 bp upstream
Tssr133705	transcription start site region 133705	644 bp upstream
Tssr133706	transcription start site region 133706	625 bp upstream
Tssr133707	transcription start site region 133707	609 bp upstream
Tssr133708	transcription start site region 133708	454 bp upstream
Tssr133709	transcription start site region 133709	305 bp upstream
Tssr133710	transcription start site region 133710	168 bp upstream