rs230129356 SNP Detail

Summary

• ID
  rs230129356
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102209421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGC CTACCTCTCG GTTCCCTTAT
  S
  CTCCGCAGAA CACCCGTGAA ACTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323834543	CHEV_11_102179909	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230129356					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102209421 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	1164 bp downstream
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr105213	transcription start site region 105213	1736 bp downstream
Tssr105214	transcription start site region 105214	1626 bp downstream
Tssr105215	transcription start site region 105215	1580 bp downstream
Tssr111024	transcription start site region 111024	1949 bp upstream
Tssr111025	transcription start site region 111025	1917 bp upstream
Tssr111026	transcription start site region 111026	1887 bp upstream
Tssr111027	transcription start site region 111027	953 bp upstream
Tssr111028	transcription start site region 111028	810 bp upstream
Tssr111029	transcription start site region 111029	779 bp upstream
Tssr111030	transcription start site region 111030	718 bp upstream
Tssr111031	transcription start site region 111031	534 bp upstream
Tssr111032	transcription start site region 111032	346 bp downstream
Tssr111033	transcription start site region 111033	498 bp downstream
Tssr111034	transcription start site region 111034	747 bp downstream
Tssr111035	transcription start site region 111035	787 bp downstream
Tssr111036	transcription start site region 111036	1230 bp downstream
Tssr111037	transcription start site region 111037	1670 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	within coordinates