rs230134863 SNP Detail

Summary

• ID
  rs230134863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGACAT TTTTACTCTT
  AACATCATTT GGAAAGGTTC AAGCTGGTAC AATTGTAACG CCAGCTCTAC TATTCTAGTT
  TCAAAGCGCC CAGAGTGTTT ATTGCTGGAA AGTCCAGCAA TAGGTAGCAG GTCCCTTGTG
  GAGGCTAGAG ATGGTTTCGT TTGGAGAGTA AACCAAGGTC CAGGATGAAG TCAAAAGAAG
  R
  GGGCTCTGCA ACCCGCCTTT AAGATACCCA CTAACAGCAA CCATTTTCTC ATCACAGAGG
  CAAGGCTAAC TGACCTGGAA AGGAGGAGCC TGGGCTGCTG TCCCTCAACG GAAGAACCAA
  AGAGAAAGAA AAAAACAAAC AGCACCCGGG AAGCCTGGAT CGTACCTGAT GTGCCTCGCT
  GTCTGAGAGT TCACTTATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847519	MGP_WTSI_5_91334157	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230134863					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847519	MGP_WTSI_5_91334157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052990 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1927 bp upstream
Rr614420	regulatory region 614420	1938 bp distal
Rr614422	regulatory region 614422	1248 bp distal
Tssr47224	transcription start site region 47224	1422 bp downstream
Tssr47225	transcription start site region 47225	1320 bp downstream
Tssr47226	transcription start site region 47226	1251 bp downstream
Tssr47227	transcription start site region 47227	1057 bp downstream
Tssr47228	transcription start site region 47228	994 bp downstream
Tssr47229	transcription start site region 47229	973 bp downstream
Tssr47230	transcription start site region 47230	948 bp downstream
Tssr47231	transcription start site region 47231	918 bp downstream
Tssr47232	transcription start site region 47232	771 bp downstream
Tssr47233	transcription start site region 47233	721 bp downstream
Tssr47234	transcription start site region 47234	686 bp downstream
Tssr47235	transcription start site region 47235	57 bp upstream
Tssr47236	transcription start site region 47236	77 bp upstream
Tssr47237	transcription start site region 47237	126 bp upstream
Tssr47238	transcription start site region 47238	132 bp upstream
Tssr47239	transcription start site region 47239	192 bp upstream
Tssr47240	transcription start site region 47240	204 bp upstream
Tssr47241	transcription start site region 47241	219 bp upstream
Tssr47242	transcription start site region 47242	256 bp upstream
Tssr47243	transcription start site region 47243	279 bp upstream
Tssr47244	transcription start site region 47244	313 bp upstream
Tssr47245	transcription start site region 47245	333 bp upstream
Tssr47246	transcription start site region 47246	384 bp upstream
Tssr47247	transcription start site region 47247	428 bp upstream
Tssr47248	transcription start site region 47248	491 bp upstream
Tssr47249	transcription start site region 47249	561 bp upstream
Tssr47250	transcription start site region 47250	699 bp upstream
Tssr47251	transcription start site region 47251	763 bp upstream
Tssr47252	transcription start site region 47252	815 bp upstream
Tssr51810	transcription start site region 51810	1988 bp upstream
Tssr51811	transcription start site region 51811	1934 bp upstream
Tssr51812	transcription start site region 51812	904 bp upstream
Tssr51813	transcription start site region 51813	887 bp upstream
Tssr51814	transcription start site region 51814	76 bp downstream
Tssr51815	transcription start site region 51815	110 bp downstream
Tssr51816	transcription start site region 51816	144 bp downstream