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rs230144523 SNP Detail
Summary
  • ID
    rs230144523
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr12:112642725 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACTATCCTGA GCTAAGAGGT
    CTGGGCATCA GCTACATAGT GAGATATGCT CTTGAGACAG CTCCCAAGTT AGATGGCACC
    CGAAATCTAG AGAGGTTCTG CCTGTAGCAG CCGGACTGTG GCTCTGTGAT AGCCTCTGTC
    ATCTATATGC CAGTAGAGAG GCATCTCGGA GTGGCAGGTG TCAGGGTTCT CAGCACAGAT
    S
    GTGGACCAGT CTGAGGAATG TCCAGTGACC CTGCAGGTGT GGCTGGTCCT GCAGGCAGCA
    GTTTCACTGT CTTTGTACCT CACAGGTTCT CTGCCCTAAG ACCTATGTAG GGTAAGTGAG
    AGGCGAGGCT GTGAGGCATT GCCCAACATG GAGGAAGAGG GAAAAGGGGG GCTGGTTGGT
    GTCAGCGTTC AACATCCAGC                                            
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss387390229 MGP_WTSI_12_113914502 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs230144523 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss387390229 MGP_WTSI_12_113914502 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:112642725 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Akt1 thymoma viral proto-oncogene 1 1459 bp upstream
Cpgi5173 CpG island 5173 1382 bp distal
Cpgi5174 CpG island 5174 1812 bp proximal
Gm30150 predicted gene, 30150 321 bp downstream
Rr369631 regulatory region 369631 752 bp downstream
Rr473554 regulatory region 473554 1870 bp distal
Rr473555 regulatory region 473555 1891 bp distal
Rr473556 regulatory region 473556 344 bp distal
Rr473557 regulatory region 473557 1288 bp distal
Rr473558 regulatory region 473558 823 bp distal
Rr473559 regulatory region 473559 632 bp distal
Rr473560 regulatory region 473560 386 bp distal
Tssr115391 transcription start site region 115391 1868 bp downstream
Tssr117880 transcription start site region 117880 1924 bp upstream
Tssr117881 transcription start site region 117881 1906 bp upstream
Tssr117882 transcription start site region 117882 1527 bp upstream
Tssr117883 transcription start site region 117883 1477 bp upstream
Tssr117884 transcription start site region 117884 1454 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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