rs230163730 SNP Detail

Summary

• ID
  rs230163730
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86929844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTTGCGCA GGCTCTCGCT
  CAGCTCTGCC AAGGCCTCAG CGTTGCGCTG CTTCTCCTTT AGCTCACGCT CCTGGTCCGT
  GCTCGACACC GATCCAGGCC TCTTGCCAGC AGCACCCACG CCCACCTCTG CCACCGTCGA
  CGAAGTCGAT GATGGAGCGG AGGATACAGT GGCTGACACA CCCGGGGGAC CCCCGAGACA
  K
  GCGGGGCCCC CGGGAGCACC CGGAGGTGCT GGAGTCGGGG GCCCTCGGCT TCCCCCCAAC
  CCGTGGGGCG GAGGCAGCAC CGCGGCGCTG GCCGGGCCGT TAAGCAGCGT CTGCGGCAAT
  AGGTTGGGGG GCACGGTTAG CTGAGGTCCC CCGCCACCAC CCGGGTTGGG CAGCCCGGTC
  ACCAACCCAC TATGCGTCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386770225	MGP_WTSI_12_88224020	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230163730					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386770225	MGP_WTSI_12_88224020	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86929844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	within coordinates
Irf2bpl	interferon regulatory factor 2 binding protein-like	within coordinates
Rr387576	regulatory region 387576	within coordinates
Rr470235	regulatory region 470235	1305 bp proximal
Rr470236	regulatory region 470236	1718 bp proximal
Tssr3903	transcription start site region 3903	1000 bp downstream
Tssr117130	transcription start site region 117130	842 bp downstream
Tssr117131	transcription start site region 117131	875 bp downstream
Tssr117132	transcription start site region 117132	1331 bp downstream
Tssr117133	transcription start site region 117133	1396 bp downstream
Tssr117134	transcription start site region 117134	1633 bp downstream
Tssr117135	transcription start site region 117135	1646 bp downstream
Tssr117136	transcription start site region 117136	1686 bp downstream
Tssr117137	transcription start site region 117137	1738 bp downstream
Tssr117138	transcription start site region 117138	1776 bp downstream