rs230178405 SNP Detail

Summary

• ID
  rs230178405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34488032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAAGTTC ATTGATAAAA
  GAGGGAGCCA CGTGCATGAT CAATACACGT TTTCTCGTAT TGCTGTGACA ATACAAGGAC
  AGGGAACCCT AACAAAGTAA TGTCAAATGC TGTGGAGTCC GTAACCACTT GCAAGCATTT
  GCTGCTTGCT GAGCACGTGT TGTTTGTGGC TCATTCTTGA CTCCTACAGC ACTGTCAAGT
  Y
  CTGTATTCTG TGGGACAAAC TCTGGGCTTT GGAACTAGTA GAACTTTGGA GAGTTAAACA
  CTAGGAGTGG ACTGGCCAGA GTTACCTATT CAGGTGGTGA GAATATAAAC ACAGGGCATT
  CAGGTTAGTC TGTCTGCATC ACCATACGTC ATGCACCTCC CACCCATCAT CTGTCTACTG
  TCTATCATCT GTTTGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320701758	CHEV_3_34332805	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs230178405					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34488032 () rs orientation: forward

Symbol	Name	Function Class
Gm20515	predicted gene 20515	within coordinates
Rr575127	regulatory region 575127	1199 bp distal
Rr575128	regulatory region 575128	859 bp proximal
Rr575129	regulatory region 575129	996 bp proximal