rs230188025 SNP Detail

Summary

• ID
  rs230188025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCATTC GGCAGTTCCT
  GCTCACTAAC CTGGTAGAGG TGGGTGGGCG ATTCTCCTGG AGACTGAACT TGGATACGTT
  AGCTCAGCAC TTGGACAAGA TAATGACCTT TCCTCAGCAA CGTGAACCCT ACTCGGGGCC
  AACTCTCTTC CTGCTTGGTG GAAATTCTAC ATATGTACAG TAAGCCGGTG TGGGACCATA
  R
  GAAGGGGCAT GCTTTGCCCA CCACCAGCTA TGGGAGCCTG CGTGGGCTAG GGGAGGCGGG
  GTATCTGGGA GCCTGGCAAT ACCACTGCGC ATGAAGGCTC ATGCACATCT CTCTCTCCTG
  TTCTCTCTCT CTCCCTTTCT CCCTCTCCCC ACACCTCTCC ATTGTCTTCC CTCTCCATTG
  GCTTCACTAT GGCGGCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824589	MGP_WTSI_5_135487557	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs230188025					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824589	MGP_WTSI_5_135487557	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040541 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	499 bp downstream
Cpgi16736	CpG island 16736	1513 bp distal
Gm43372	predicted gene 43372	1579 bp upstream
Gm73578	predicted gene, 73578	300 bp downstream
Rr110217	regulatory region 110217	1060 bp proximal
Rr110218	regulatory region 110218	1460 bp proximal
Rr124503	regulatory region 124503	540 bp distal
Rr124504	regulatory region 124504	59 bp proximal
Tssr1661	transcription start site region 1661	1655 bp downstream
Tssr1662	transcription start site region 1662	1040 bp downstream
Tssr1663	transcription start site region 1663	1472 bp downstream
Tssr1664	transcription start site region 1664	1490 bp downstream
Tssr49122	transcription start site region 49122	1988 bp downstream
Tssr49123	transcription start site region 49123	1961 bp downstream
Tssr49124	transcription start site region 49124	1922 bp downstream
Tssr49125	transcription start site region 49125	1911 bp downstream
Tssr49126	transcription start site region 49126	1842 bp downstream
Tssr49127	transcription start site region 49127	1786 bp downstream
Tssr49128	transcription start site region 49128	1673 bp downstream
Tssr53717	transcription start site region 53717	1059 bp downstream
Tssr53718	transcription start site region 53718	1075 bp downstream
Tssr53719	transcription start site region 53719	1125 bp downstream
Tssr53720	transcription start site region 53720	1170 bp downstream
Tssr53721	transcription start site region 53721	1427 bp downstream
Tssr53722	transcription start site region 53722	1444 bp downstream